PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_930_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family TALE
Protein Properties Length: 649aa    MW: 72651.3 Da    PI: 6.8659
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_930_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.4e-094224591954
                                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                         Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  cra_locus_930_iso_5_len_2193_ver_3 422 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 459
                                         554459******************************88 PP
2BELL112.91.7e-36280348472
                                BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                         elqk+k+kLl++leeVd+rYk+y++q++ v+ sFe+vag g+ak+Y +lA+ka+SrhFrcL+d i++q+
  cra_locus_930_iso_5_len_2193_ver_3 280 ELQKRKSKLLQMLEEVDRRYKHYCNQMRSVVCSFEEVAGNGAAKVYSALASKAMSRHFRCLRDGIVGQV 348
                                         89****************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.1E-52221346IPR006563POX domain
PfamPF075261.5E-43227344IPR006563POX domain
PROSITE profilePS5007112.115400463IPR001356Homeobox domain
CDDcd000863.56E-11403464No hitNo description
SMARTSM003892.5E-9403467IPR001356Homeobox domain
SuperFamilySSF466894.71E-17404470IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-28406469IPR009057Homeodomain-like
PfamPF059208.7E-18420459IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
KYFAGDDVLR YNLRFRQQKL FSMPSPGGGE EEKTTRSTMV MTTGYNFSDV STAANNPNNM  60
VSQFQTFDSN THQEIYGLDM IGFSSKNNNL HHHQPPSTHH DSSSSVMWKE FFGKSGDGPS  120
SSSSKTTINH HHQPSDGFYH HHHQPPPDFS TTGGGVSEAA GWTHHDPCVF PCEGNDQSRP  180
ISSTHQGLSL TLGNTSNNLQ IFQQEGLFGK LSAAAQYHHH HHGQFEIRSS KYLNPAQELL  240
NEFCCLDTKQ NSQKTHNPQW HEDQENATKF QSLYSLDLLE LQKRKSKLLQ MLEEVDRRYK  300
HYCNQMRSVV CSFEEVAGNG AAKVYSALAS KAMSRHFRCL RDGIVGQVKA IKKALGEKDH  360
HTSTSSVAPG TTRGETPRLR LLDQTLRQQR AFQQMNMMES HPWRPQRGLP ERAVSVLRAW  420
LFEHFLHPYP SDVDKHILAR QTGLSRSQVS NWFINARVRL WKPMVEEMYL EENKEQENIG  480
SSDGTNSLDE INVSRHNHHQ DDQKPTADQL VRIDSECLSS IINNPEKNDT TTSKNQLQDQ  540
ELQGTFGRVT DTFGAIELDF SSYNQNLVGG SGGGGSVSLT LGLQQHGGGG GGGVSLAFSS  600
AASQNSLFYG REHIEDCPPS VQYSLLDNEG QNLPYRNLMG AQLLHDLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A4e-16409467563Homeobox protein Meis2
4xrm_B4e-16409467563Homeobox protein Meis2
4xrs_A4e-16409466158Homeobox protein Meis1
4xrs_B4e-16409466158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439494.10.0hypothetical protein CICLE_v10019130mg
RefseqXP_006476516.10.0PREDICTED: homeobox protein BEL1 homolog
SwissprotQ388971e-142BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLF6HUM60.0F6HUM6_VITVI; Putative uncharacterized protein
STRINGVIT_02s0025g00200.t010.0(Vitis vinifera)